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1

Assignment of Atlantic salmon (Salmo salar)linkage groups to specific chromosomes: Conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss)

Ruth B Phillips, Kimberly A Keatley, Matthew R Morasch, Abigail B Ventura, Krzysztof P Lubieniecki, Ben F Koop, Roy G Danzmann, William S Davidson

Journal:

Year:

2009

Language:

english

File:

PDF, 924 KB

english, 2009

2

Regulation and expression of sexual differentiation factors in embryonic and extragonadal tissues of Atlantic salmon

Kristian R von Schalburg, Motoshige Yasuike, Ryosuke Yazawa, Johan G de Boer, Linda Reid, Stacy So, Adrienne Robb, Eric B Rondeau, Ruth B Phillips, William S Davidson, Ben F Koop

Journal:

Year:

2011

Language:

english

File:

PDF, 1.35 MB

english, 2011

3

Comparative genomic analysis of Atlantic salmon,Salmo salar, from Europe and North America

Krzysztof P Lubieniecki, Stacy L Jones, Evelyn A Davidson, Jay Park, Ben F Koop, Seumas Walker, William S Davidson

Journal:

Year:

2010

Language:

english

File:

PDF, 1.63 MB

english, 2010

4

Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon)

Roy G Danzmann, Evelyn A Davidson, Moira M Ferguson, Karim Gharbi, Ben F Koop, Bjorn Hoyheim, Sigbjorn Lien, Krzysztof P Lubieniecki, Hooman K Moghadam, Jay Park, Ruth B Phillips, William S Davidson

Journal:

Year:

2008

Language:

english

File:

PDF, 427 KB

english, 2008

5

Genomic organization and characterization of two vomeronasal 1 receptor-like genes (ora1 and ora2) in Atlantic salmon Salmo salar

Kimberley A. Johnstone, Krzysztof P. Lubieniecki, William Chow, Ruth B. Phillips, Ben F. Koop, William S. Davidson

Journal:

Marine Genomics

Year:

2008

Language:

english

File:

PDF, 2.80 MB

english, 2008

6

Genomic organization of Atlantic salmon (Salmo salar) fatty acid binding protein (fabp2) genes reveals independent loss of duplicate loci in teleosts

Yvonne Y.Y. Lai, Krzysztof P. Lubieniecki, Ruth B. Phillips, William Chow, Ben F. Koop, William S. Davidson

Journal:

Marine Genomics

Year:

2009

Language:

english

File:

PDF, 1.21 MB

english, 2009

7

Glacial biogeography of North American coho salmon (Oncorhynchus kisutch)

Christian T. Smith, R. John Nelson, Chris C. Wood, Ben F. Koop

Journal:

Molecular Ecology

Year:

2001

Language:

english

File:

PDF, 487 KB

english, 2001

8

Genomic organization and evolution of the Atlantic salmon hemoglobin repertoire

Nicole L Quinn, Keith A Boroevich, Krzysztof P Lubieniecki, William Chow, Evelyn A Davidson, Ruth B Phillips, Ben F Koop, William S Davidson

Journal:

Year:

2010

Language:

english

File:

PDF, 1.19 MB

english, 2010

9

Genomic organization of duplicated major histocompatibility complex class I regions in Atlantic salmon (Salmo salar)

Morten F Lukacs, Håvard Harstad, Unni Grimholt, Marianne Beetz-Sargent, Glenn A Cooper, Linda Reid, Hege G Bakke, Ruth B Phillips, Kristina M Miller, William S Davidson, Ben F Koop

Journal:

Year:

2007

Language:

english

File:

PDF, 771 KB

english, 2007

10

Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome

Nicole L Quinn, Natasha Levenkova, William Chow, Pascal Bouffard, Keith A Boroevich, James R Knight, Thomas P Jarvie, Krzysztof P Lubieniecki, Brian A Desany, Ben F Koop, Timothy T Harkins, William S

Journal:

Year:

2008

Language:

english

File:

PDF, 2.31 MB

english, 2008

11

Regulation, expression and characterization of aromatase (cyp19b1) transcripts in ovary and testis of rainbow trout (Oncorhynchus mykiss)

Kristian R. von Schalburg, Motoshige Yasuike, William S. Davidson, Ben F. Koop

Journal:

Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.58 MB

english, 2010

12

Characterization of the Atlantic salmon (Salmo salar) brain-type fatty acid binding protein (fabp7) genes reveals the fates of teleost fabp7 genes following whole genome duplications

Yvonne Y.Y. Lai, Krzysztof P. Lubieniecki, Ben F. Koop, William S. Davidson

Journal:

Year:

2012

Language:

english

File:

PDF, 1.67 MB

english, 2012

13

Identification of Surrogates of Protection against Yersiniosis in Immersion Vaccinated Atlantic Salmon

Bridle, Andrew R., Koop, Ben F., Nowak, Barbara F., Chakravortty, Dipshikha

Journal:

Year:

2012

Language:

english

File:

PDF, 192 KB

english, 2012

14

Sequencing the genome of the Atlantic salmon (Salmo salar)

William S Davidson, Ben F Koop, Steven JM Jones, Patricia Iturra…

Journal:

Year:

2010

Language:

english

File:

PDF, 394 KB

english, 2010

15

Atlantic salmon lactate dehydrogenase (LDH) isozymes: A model for studying a whole genome duplication superimposed on an ancient series of gene duplications

Ma, Xuezheng, Lubieniecki, Krzysztof P., Loewe, Celeste A.T., Philips, Ruth B., Koop, Ben F., Davidson, William S.

Journal:

Journal of Biotechnology

Year:

2008

Language:

english

File:

PDF, 46 KB

english, 2008

16

Transcriptomic responses to emamectin benzoate in Pacific and Atlantic Canada salmon lice Lepeophtheirus salmonis with differing levels of drug resistance

Sutherland, Ben J. G., Poley, Jordan D., Igboeli, Okechukwu O., Jantzen, Johanna R., Fast, Mark D., Koop, Ben F., Jones, Simon R. M.

Journal:

Evolutionary Applications

Year:

2015

Language:

english

File:

PDF, 776 KB

english, 2015

17

The Atlantic salmon genome provides insights into rediploidization

Lien, Sigbjørn, Koop, Ben F., Sandve, Simen R., Miller, Jason R., Kent, Matthew P., Nome, Torfinn, Hvidsten, Torgeir R., Leong, Jong S., Minkley, David R., Zimin, Aleksey, Grammes, Fabian, Grove, Hara

Journal:

Year:

2016

Language:

english

File:

PDF, 4.73 MB

english, 2016

18

Rett Syndrome: Investigation of Nine Patients, including PET Scan

Dunn, Henry G., Stoessl, A. Jon, Ho, Helena H., MacLeod, Patrick M., Poskitt, Kenneth J., Doudet, Doris J., Schulzer, Michael, Blackstock, Derek, Dobko, Teresa, Koop, Ben, Amorim, Giovana V. de

Journal:

Canadian Journal of Neurological Sciences / Journal Canadien des Sciences Neurologiques

Year:

2002

File:

PDF, 586 KB

2002

19

Effects of the vertically transmitted microsporidian Facilispora margolisi and the parasiticide emamectin benzoate on salmon lice (Lepeophtheirus salmonis)

Poley, Jordan D., Sutherland, Ben J. G., Fast, Mark D., Koop, Ben F., Jones, Simon R. M.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.02 MB

english, 2017

20

The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei

Rondeau, Eric B., Minkley, David R., Leong, Jong S., Messmer, Amber M., Jantzen, Johanna R., von Schalburg, Kristian R., Lemon, Craig, Bird, Nathan H., Koop, Ben F., Yin, Tongming

Journal:

Year:

2014

Language:

english

File:

PDF, 2.53 MB

english, 2014

21

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome

Christensen, Kris A., Leong, Jong S., Sakhrani, Dionne, Biagi, Carlo A., Minkley, David R., Withler, Ruth E., Rondeau, Eric B., Koop, Ben F., Devlin, Robert H., Meador, James P.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.73 MB

english, 2018

22

Limited genetic parallelism underlies recent, repeated incipient speciation in geographically proximate populations of an Arctic fish ( Salvelinus alpinus )

Salisbury, Sarah J., McCracken, Gregory R., Perry, Robert, Keefe, Donald, Layton, Kara K.S., Kess, Tony, Nugent, Cameron M., Leong, Jong S., Bradbury, Ian R., Koop, Ben F., Ferguson, Moira M., Ruzzant

Journal:

Molecular Ecology

Year:

2020

File:

PDF, 1.37 MB

2020

23

Establishment and characterization of a new human Burkitt's lymphoma cell line (WSU-BL)

Anwar N. Mohamed, Ramzi M. Mohammad, Ben F. Koop, Ayad Al-Katib

Journal:

Year:

1989

Language:

english

File:

PDF, 757 KB

english, 1989

24

TCR and CD3 antibody cross-reactivity in 44 species

Melanie L. Conrad, William C. Davis, Ben F. Koop

Journal:

Cytometry Part A

Year:

2007

Language:

english

File:

PDF, 464 KB

english, 2007

25

ERCC1: A comparative genomic perspective

Michael D. Wilson, Cindy C. Ruttan, Ben F. Koop, Barry W. Glickman

Journal:

Environmental and Molecular Mutagenesis

Year:

2001

Language:

english

File:

PDF, 163 KB

english, 2001

26

Risk-based analysis of polychlorinated biphenyl toxicity in harbor seals

Lizzy Mos, Marc Cameron, Steven J Jeffries, Ben F Koop, Peter S Ross

Journal:

Integrated Environmental Assessment and Management

Year:

2010

Language:

english

File:

PDF, 201 KB

english, 2010

27

Methods in Enzymology Vol. 224. Molecular Evolution: Producing the Biochemical Data, Elizabeth A. Zimmer, Thomas J. White, Rebecca L. Cann, and Allan C. Wilson, Academic Press, San Diego, 1993, 725 pp., $95.00.

Journal:

Molecular Phylogenetics and Evolution

Year:

1994

File:

PDF, 227 KB

1994

28

Evolution and Selection of Primate T Cell Antigen Receptor BV8 Gene Subfamily

William Funkhouser, Ben F. Koop, Patrick Charmley, Duane Martindale, Jerry Slightom, Leroy Hood

Journal:

Molecular Phylogenetics and Evolution

Year:

1997

Language:

english

File:

PDF, 790 KB

english, 1997

29

The Structure and Evolution of the Ribosomal Proteins Encoded in the spc Operon of the Archaeon (Crenarchaeota) Sulfolobus acidocaldarius

Decheng Yang, Isolde Kusser, Andreas K.E. Köpke, Ben F. Koop, Alastair T. Matheson

Journal:

Molecular Phylogenetics and Evolution

Year:

1999

Language:

english

File:

PDF, 124 KB

english, 1999

30

Partial 28S rDNA Sequences and the Antiquity of Hydrothermal Vent Endemic Gastropods

Andrew G. McArthur, Ben F. Koop

Journal:

Molecular Phylogenetics and Evolution

Year:

1999

Language:

english

File:

PDF, 356 KB

english, 1999

31

Large-scale DNA sequencing

Tim Hunkapiller, Robert J. Kaiser, Ben F. Koop, Leroy Hood

Journal:

Current Opinion in Biotechnology

Year:

1991

Language:

english

File:

PDF, 1.23 MB

english, 1991

32

A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon (Salmo salarL.)

Stuart G Jantzen, Dan S Sanderson, Kris R von Schalburg, Motoshige Yasuike, Francesco Marass, Ben F Koop

Journal:

BMC Research Notes

Year:

2011

Language:

english

File:

PDF, 847 KB

english, 2011

33

Structural analysis of the mouse T-cell receptorTcra V2subfamily

Kai Wang, Chia-Lam Kou, Kuang-Chuan Cheng, Mi-Kyung Lee, Bryan Paeper, Ben F. Koop, Tai-June Yoo, Leroy Hood

Journal:

Year:

1994

Language:

english

File:

PDF, 711 KB

english, 1994

34

Nucleotide sequence and evolution of the orangutan ε globin gene region and surrounding Alu repeats

Ben F. Koop, Michael M. Miyamoto, Jennifer E. Embury, Morris Goodman, John Czelusniak, Jerry L. Slightom

Journal:

Journal of Molecular Evolution

Year:

1986

Language:

english

File:

PDF, 845 KB

english, 1986

35

Primate evolution at the DNA level and a classification of hominoids

Morris Goodman, Danilo A. Tagle, David H. A. Fitch, Wendy Bailey, John Czelusniak, Ben F. Koop, Philip Benson, Jerry L. Slightom

Journal:

Journal of Molecular Evolution

Year:

1990

Language:

english

File:

PDF, 626 KB

english, 1990

36

Serious complication 1

Violet J. Faber, Huub C. van der Vaart, Ben G. F. Heggelman, Steven E. Schraffordt Koops

Journal:

International Urogynecology Journal

Year:

2008

Language:

english

File:

PDF, 116 KB

english, 2008

37

Comparative genomic sequence analysis of the Williams syndrome region (LIMK1-RFC2) of human Chromosome 7q11.23

Duane W. Martindale, Michael D. Wilson, Diana Wang, Robert D. Burke, Xianming Chen, Vincent Duronio, Ben F. Koop

Journal:

Mammalian Genome

Year:

2000

Language:

english

File:

PDF, 966 KB

english, 2000

38

Genomic sequence comparison of the human and mouse adenosine deaminase gene regions

Anthony G. Brickner, Ben F. Koop, Bruce J. Aronow, Dan A. Wiginton

Journal:

Mammalian Genome

Year:

1999

Language:

english

File:

PDF, 536 KB

english, 1999

39

EST and Mitochondrial DNA Sequences Support a Distinct Pacific Form of Salmon Louse,Lepeophtheirus salmonis

Ryosuke Yazawa, Motoshige Yasuike, Jong Leong, Kristian R. von Schalburg, Glenn A. Cooper, Marianne Beetz-Sargent, Adrienne Robb, William S. Davidson, Simon R. M. Jones, Ben F. Koop

Journal:

Marine Biotechnology

Year:

2008

Language:

english

File:

PDF, 253 KB

english, 2008

40

Comparative Genomics Identifies Candidate Genes for Infectious Salmon Anemia (ISA) Resistance in Atlantic Salmon (Salmo salar)

Jieying Li, Keith A. Boroevich, Ben F. Koop, William S. Davidson

Journal:

Marine Biotechnology

Year:

2011

Language:

english

File:

PDF, 306 KB

english, 2011

41

Genomic Resources for Sea Lice: Analysis of ESTs and Mitochondrial Genomes

Motoshige Yasuike, Jong Leong, Stuart G. Jantzen, Kristian R. von Schalburg, Frank Nilsen, Simon R. M. Jones, Ben F. Koop

Journal:

Marine Biotechnology

Year:

2012

Language:

english

File:

PDF, 620 KB

english, 2012

42

Flatfish at seamount hydrothermal vents show strong genetic divergence between volcanic arcs

Verena Tunnicliffe, Ben F. Koop, Jennifer Tyler, Stacy So

Journal:

Year:

2010

Language:

english

File:

PDF, 624 KB

english, 2010

43

Type I microsatellite markers from Atlantic salmon (Salmo salar) expressed sequence tags

SIEMON H. S. NG, ALAN CHANG, GORDON D. BROWN, BEN F. KOOP, WILLIAM S. DAVIDSON

Journal:

Molecular Ecology Resources

Year:

2005

Language:

english

File:

PDF, 88 KB

english, 2005

44

Primate η-globin DNA sequences and man's place among the great apes

Koop, Ben F., Goodman, Morris, Xu, Peilin, Chan, Keith, Slightom, Jerry L.

Journal:

Year:

1986

File:

PDF, 692 KB

1986

45

10.1038/81619

Bech-Hansen, N.Torben, Naylor, Margaret J., Maybaum, Tracy A., Sparkes, Rebecca L., Koop, Ben, Birch, David G., Bergen, Arthur A.B., Prinsen, Clemens F.M., Polomeno, Robert C., Gal, Andreas, Drack, Ar

Journal:

Nature Genetics

Year:

2000

Language:

english

File:

PDF, 2.59 MB

english, 2000

46

10.1038/947

Bech-Hansen, N. Torben, Naylor, Margaret J., Maybaum, Tracy A., Pearce, William G., Koop, Ben, Fishman, Gerald A., Mets, Marilyn, Musarella, Maria A., Boycott, Kym M.

Journal:

Nature Genetics

Year:

1998

Language:

english

File:

PDF, 176 KB

english, 1998

47

Striking sequence similarity over almost 100 kilobases of human and mouse T–cell receptor DNA

Koop, Ben F., Hood, Leroy

Journal:

Nature Genetics

Year:

1994

File:

PDF, 659 KB

1994

48

Expression of morphogenic genes in mature ovarian and testicular tissues: Potential stem-cell niche markers and patterning factors

Kristian R. von Schalburg, Sean P. McCarthy, Matthew L. Rise, James C. Hutson, William S. Davidson, Ben F. Koop

Journal:

Molecular Reproduction and Development

Year:

2006

Language:

english

File:

PDF, 230 KB

english, 2006

49

Identification of a molecular marker for type A spermatogonia by microarray analysis using gonadal cells from pvasa-GFP transgenic rainbow trout (Oncorhynchus mykiss)

Ayaka Yano, Kris von Schalburg, Glenn Cooper, Ben F. Koop, Goro Yoshizaki

Journal:

Molecular Reproduction and Development

Year:

2009

Language:

english

File:

PDF, 248 KB

english, 2009

50

Model genomes: The benefits of analysing homologous human and mouse sequences

Leroy Hood, Ben Koop, Joan Goverman, Tim Hunkapiller

Journal:

Trends in Biotechnology

Year:

1992

Language:

english

File:

PDF, 530 KB

english, 1992

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